Test matrices 1 through 5 were designed to exercise column pivoting. Although the upper bound of a quantity involved in the characterization of a rank revealing. First, we develop an efficient block algorithm for approximating an rrqr factorization, employing a windowed version of the commonly used golub pivoting strategy, aided by incremental condition estimation. Rankone update to a rank revealing qr rrqr factorization. The problem of finding a rank revealing qr rrqr factorisation of a matrix a consists of permuting the columns of a such that the resulting qr factorisation contains an upper triangular matrix who. This paper and the accompanying algorithm describe and analyze a suite of codes that implement combinations and modifications of several previously published methods for rrqr. A rankrevealing qr rrqr factorization is an efficient way to compute a reasonable representation of the null space of a matrix. The singular value decomposition can be used to generate an rrqr, but it is not an efficient method to do so. Matrix 6 was designed to test the behavior of the condition estimation in the presence of clusters for the smallest singular value.
Efficient algorithms for computing a strong rankrevealing qr. Accuracy and stability of numerical algorithms guide books. The usual tradeoff is that the svd is more expensive but can reveal rank more reliably. On the failure of rank revealing qr factorization software a case study 2006 cached. Rank revealing factorizations based on qr factorization with column permutations or lu factorization with row and column permutations are also efficient approaches for computing a lowrank approximation. On the failure of rankrevealing qr factorization software a case study article in acm transactions on mathematical software 352 july 2008 with 30 reads how we measure reads.
Zlatko drmac and zvonimir bujanovic, title on the failure of rank revealing qr factorization software a case study, year 2006 share. A pivoting strategy based on the idea of local maximum volumes is introduced and a proof of the. Theres probably a better way to do this with a rank revealing qr, but the following will work in a pinch. Finally, x6 recalls the importance of pivoting from the numerical point of view. Factorizations that are usually rank revealing but have a possibility of failure. Siam journal on numerical analysis volume, issue 6 10. On the failure of rank revealing qr factorization software the netlib. Communication avoiding rank revealing qr factorization. Can also handle complex and single precision arrays.
Software practicalities are emphasized throughout, with particular reference to lapack and matlab. This approach is very competitive on a hybrid platform equipped with a graphics processor, with a performance advantage over the conventional factorization due to the reduced amount of data. Computer science division and mathematics department, uc. Of course there is much good matlab software but it does not satisfy the criteria that we have chosen. To compute a lowrank approximation of a dense matrix, in this paper, we study the performance of qr factorization with column pivoting or with restricted pivoting on. Qr decomposition is often used to solve the linear least squares problem and is the basis for a particular eigenvalue algorithm, the qr. On the failure of rankrevealing qr factorization software a case study, acm trans. Mechanical engineering, university of california, santa barbara verified email at engr. Mathematical software new more robust and reliable xgeqp3 and xgeqpf routines qr factorization with column pivoting in lapack 3. To compute optionally a rank revealing qr factorization of a real general mbyn real or complex matrix a, which may be rank deficient, and estimate its effective rank using incremental condition estimation. In the rank one deficient case, the two algorithms produce the.
Communication avoiding rank revealing qr factorization with. The first one uses the for loop to compute the upper. The roster of standard matrix decompositions includes the pivoted qr factorization, the eigenvalue decomposition. Within each frontal matrix, lapack and the multithreaded blas enable the method to obtain high performance on.
For the qr factorization using classic gramschmidt algorithm, i found the 2 different implementations below. Qr decomposition of a large sparse matrix is used to solve the linear least squares ls problem arising in power system state estimation. On the failure of rankrevealing qr factorization softwarea case study z drmac, z bujanovic acm transactions on mathematical software toms 35 2, 128, 2008. Lu factorization with panel rank revealing pivoting and. Qr factorization, rank revealing, column pivoting, minimize communication. New parallel rankrevealing qr factorization algorithms.
Efficient algorithms for computing a strong rankrevealing. Rank revealing qr factorizations sjsu scholarworks. The problem of finding a rankrevealing qr rrqr factorisation of a matrix a consists of permuting the columns of a such that the resulting qr. Qr decomposition is often used to solve the linear least squares problem and is the basis for a particular eigenvalue algorithm, the qr algorithm. Computing rankrevealing qr factorizations of dense matrices. On the failure of rank revealing qr factorization software a case study. In this paper we introduce carrqr, a communication avoiding rank revealing qr.
Truncated lu factorization with column and row tournament pivoting experimental results, lu crtp. Computing rankrevealing qr factorizations of dense. The problem of finding a rankrevealing qr rrqr factorisation of a matrix a. A very useful factorization of an m by n m n matrix a is the qr factorization, given by aii qr, where ii e rnxn is a permutation matrix, qe rmx has orthogonal columns and satisfies qq i,, and r e rnx is upper triangular. In this paper, we show how to construct a qr factorization which can also reveal the rank reliably. Their combined citations are counted only for the first article. Scientific programming hindawi publishing corporation. Chan has noted that, even when the singular value decomposition of a matrix a is known, it is still not obvious how to find a rankrevealing qr factorization rrqr of a if a has numerical rank deficiency.
Van straalen 20 experiences from software engineering of large scale amr multiphysics code frameworks, at the first workshop on sustainable software for science. Bischof, mathematics and computer science division, argonne. Strong rankrevealing qr factorization math berkeley. Jan 24, 2020 we present a novel method for the qr factorization of large tallandskinny matrices that introduces an approximation technique for computing the householder vectors. We discuss how pivoting contributes to more accurate factorization, and how. On the failure of rankrevealing qr factorization software. Lu factorization with panel rank revealing pivoting and its. An rrqr factorization or rankrevealing qr factorization is a matrix decomposition algorithm based on the qr factorization which can be used to determine the rank of a matrix.
Lowrank matrices arise in many scientific and engineering computations. Submitted to journal of open research software, 2014. Rankrevealing qr factorization file exchange matlab. Drmac z and bujanovic z 2008 on the failure of rankrevealing qr factorization software a case study, acm transactions on mathematical software toms, 35. Both the singular value decomposition svd and the qr factorization play central roles in signal processing algorithms. The permutation returned by the panel rank revealing factorization is applied on the rows of the input matrix, and the lfactor of the panel is computed based on the rfactor of the strong rrqr factorization. On the failure of rankrevealing qr factorization softwarea case study. This fixes a subtle numerical bug caused by underestimate of the distance to singularity dating back to linpack that can give completely wrong results. The ones marked may be different from the article in the profile. Wilkinson submitted by jack dongarra abstract an algorithm is presented for computing a column permutation li and a qr factorization a ii qr of an m by n m n matrix a such that a. Pdf a block algorithm for computing rankrevealing qr. This also calls for serious rethinking of the compiler and debugger design for. Newest matrixfactorization questions computational.
In this paper we introduce carrqr, a communication avoiding rank revealing qr factorization with tournament pivoting. We combine computer experiments and numerical analysis to isolate, analyze, and fix the problem. Key words, orthogonal factorization, rank revealing factorization, numericalrank. To compute a lowrank approximation of a dense matrix, in this paper, we study the performance of qr factorization with column pivoting or with restricted pivoting on multicore cpus with a. The algorithm uses a reduction strategy to perform the factorization which in turn allows a good degree of parallelism. Multifrontal multithreaded rankrevealing sparse qr factorization. In section 2, we give an overview of the previous results on rank revealing lu and qr factorizations. The algorithm is blocked, to allow it to be implemented efficiently. By applying another in essence also rankrevealing orthogonal factorization. On the failure of rank revealing qr factorization software citeseerx. It can also be used to estimate rank of matrix rank revealing qr decomposition. Improve the ability of software developers to adapt existing software to new hardware. The svd can be used to generate an rrqr, but it is not an efficient method to do so. We call the factorization 1 a rankrevealing qr rrqr factorizationif it satisfies.
On the failure of rankrevealing qr factorization software a case study. Drmac z and bujanovic z 2008 on the failure of rankrevealing qr factorization software a case. Citeseerx document details isaac councill, lee giles, pradeep teregowda. Both computational and storage costs of manipulating such matrices may be reduced by taking advantages of their lowrank properties. While this greedy algorithm is known to fail on the socalled kahan. This paper reports an unexpected and rather erratic behavior of the lapack software implementation of the qr factorization with busingergolub column pivoting. Suitesparseqr is a sparse qr factorization package based on the multifrontal method. Numerical algorithms for highperformance computational.
That allows us to look at the diagonal elements to figure out when to cut things off. Efficient algorithms for computing a strong rankrevealing qr factorization. The first factorization of this type, the qr factorization with column pivoting, referred to as qrcp, was introduced in. Let m qr be the qr factorization of m with its columns permuted according to the permutation matrix. Rank revealing factorizations and low rank approximations. An rrqr factorization or rank revealing qr factorization is a matrix decomposition algorithm based on the qr factorization which can be used to determine the rank of a matrix. Implementation of jacobi rotations for accurate singular value computation in floating point arithmetic, siam j. Pdf we present a block algorithm for computing rankrevealing qr. The matrix q is orthogonal and r is upper triangular, so a qr is the required qrdecomposition. On the failure of rank revealing qr factorization software.
Qr factorization, rankrevealing orthogonal factorization. Wilkinson submitted by jack dongarra abstract an algorithm is presented for computing a column permutation li and a qr factorization a ii qr of an m by n m n matrix a such that a possible rank deficiency of a will be revealed. San jose state university sjsu scholarworks masters theses masters theses and graduate research 1997 rank revealing qr factorizations lily l. Key words, orthogonal factorization, rankrevealing factorization, numericalrank. Rankrevealing qr factorization file exchange matlab central. Demmel, laura grigoriy, ming gu z, and hua xiang x abstract. We develop algorithms and implementations for computing rankrevealing qr rrqr factorizations of dense matrices. This examples should convince the reader that the problem is serious, and that it may lead to numerical catastrophes in engineering applications. Qr decomposition for rankdeficient matrix mathematics. We present a novel method for the qr factorization of large tallandskinny matrices that introduces an approximation technique for computing the householder vectors. A note on the scalapack routines for computing the qr. We show that carrqr reveals the numerical rank of a matrix in an analogous way to qr factorization with column pivoting qrcp.
The 30year old problem, dating back to linpack, has undetectedly badly affected many computational routines and software packages, as well as the study of rankrevealing qr factorizations. On the failure of rank revealing qr factorization software a case study zlatko drmac and zvonimir bujanovi c department of mathematics, university of zagreb, 0 zagreb, croatia. Its utility arises from the numerical stability offered by orthogonal transformations. The need for single vector pivoting in classical algorithms for computing qr factorizations is avoided by the use of randomized sampling to find blocks of pivot vectors at once. The most accurate rank revealing factorization is, of course, the singular value. The mexfunctions are using the rankrevealing qr routines xgeqpx and xgeqpy from acm algorithm 782. Rank revealing factorizations, and low rank approximations l. Plan low rank matrix approximation rank revealing qr factorization lu crtp. Existence of generalized mt factorizations in this section, we first define the generalized lur factorization of a given matrix a e r, and then we give an equivalence condition for the existence of the lur factorization. Mathworks is the leading developer of mathematical computing software for. We develop algorithms and implementations for computing rank revealing qr rrqr factorizations of dense matrices. Practice and experiences wssspe1, november 17, denver, co.
Dec 09, 2019 on the failure of rankrevealing qr factorization software a case study, acm trans. May 03, 20 in this paper we introduce carrqr, a communication avoiding rank revealing qr factorization with tournament pivoting. The routine uses a qr factorization with column pivoting. The use of householder transformations is inherently the most simple of the numerically stable qr decomposition algorithms due to the use of reflections as the mechanism for producing zeroes in the r matrix.